No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Fail: (1)  383   -5.2 -5.2 (1,1:483)   49  1.61 0.00 0.00  BM134557Ta14P067F03P137D101F1_004.ab1       40   101 (413)  C BM134557Ta14P067F03P137D101R1_004.ab1   (96)   445   384 *
  Worst pair: offset 0 
LLR breakdown: discreps: -2.4 (<20 part: 0.0 (#=0), >20:-2.4 (#=1); in HQ: -2.4, out HQ 0.0), match: 1.4  trail: -2.3  lead: -1.9  total: -5.2   49  1.61 0.00 0.00  BM134557Ta14P067F03P137D101F1_004.ab1       40   101 (413)  C BM134557Ta14P067F03P137D101R1_004.ab1   (96)   445   384 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.2       0        1

Gap   # merges  # failures
 size
383       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta14P067F03P137D101R1_004.ab1     1 
Contig length: old 541, new 541

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta14P067F03P137D101F1_004.ab1     1 
Contig length: old 514, new 514