No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Fail: (1)  375   -5.4 -5.4 (1,1:473)   50  1.59 0.00 0.00  BM134557Ta15P067F03P137D101F1_001.ab1       37    99 (413)  C BM134557Ta15P067F03P137D101R1_001.ab1   (96)   438   376 *
  Worst pair: offset 0 
LLR breakdown: discreps: -2.2 (<20 part: 0.0 (#=0), >20:-2.2 (#=1); in HQ: -2.2, out HQ 0.0), match: 1.4  trail: -2.7  lead: -1.9  total: -5.4   50  1.59 0.00 0.00  BM134557Ta15P067F03P137D101F1_001.ab1       37    99 (413)  C BM134557Ta15P067F03P137D101R1_001.ab1   (96)   438   376 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.4       0        1

Gap   # merges  # failures
 size
375       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta15P067F03P137D101R1_001.ab1     1 
Contig length: old 534, new 534

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta15P067F03P137D101F1_001.ab1     1 
Contig length: old 512, new 512