No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -531  -477  0 36    376     S -477- -446, E -375- 0
Fail: (1)  376   -2.6 -2.6 (1,1:477)   52  4.29 0.00 0.00  BM134557Ta17P067F03P137D101F1_031.ab1       33   102 (412)  C BM134557Ta17P067F03P137D101R1_031.ab1   (86)   446   377 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.6       0        1

Gap   # merges  # failures
 size
376       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta17P067F03P137D101R1_031.ab1     1 
Contig length: old 532, new 532

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta17P067F03P137D101F1_031.ab1     1 
Contig length: old 514, new 514