No. words: 1084; after pruning: 1058


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -541  -484  0 57    376     S -484- -446, E -375- 0
Fail: (1)  376   -3.7 -3.7 (1,1:484)   55  1.43 0.00 0.00  BM134557Ta19P067F03P137D101F1_029.ab1       40   109 (433)  C BM134557Ta19P067F03P137D101R1_029.ab1   (96)   446   377 *
  Worst pair: offset 0 
LLR breakdown: discreps: -1.4 (<20 part: -1.4 (#=1), >20:0.0 (#=0); in HQ: -1.4, out HQ 0.0), match: 1.5  trail: -2.4  lead: -1.5  total: -3.8   55  1.43 0.00 0.00  BM134557Ta19P067F03P137D101F1_029.ab1       40   109 (433)  C BM134557Ta19P067F03P137D101R1_029.ab1   (96)   446   377 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.7       0        1

Gap   # merges  # failures
 size
376       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta19P067F03P137D101R1_029.ab1     1 
Contig length: old 542, new 542

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta19P067F03P137D101F1_029.ab1     1 
Contig length: old 542, new 542