No. words: 1086; after pruning: 1060


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -541  -484  0 59    369     S -484- -447, E -368- 0
Fail: (1)  369   -4.7 -4.7 (1,1:484)   60  3.85 0.00 0.00  BM134557Ta21P067F03P137D101F1_027.ab1       39   116 (428)  C BM134557Ta21P067F03P137D101R1_027.ab1   (95)   447   370 *
  Worst pair: offset 0 
LLR breakdown: discreps: -0.5 (<20 part: -0.5 (#=3), >20:0.0 (#=0); in HQ: -0.5, out HQ 0.0), match: 1.7  trail: -3.9  lead: -2.0  total: -4.7   60  3.85 0.00 0.00  BM134557Ta21P067F03P137D101F1_027.ab1       39   116 (428)  C BM134557Ta21P067F03P137D101R1_027.ab1   (95)   447   370 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.7       0        1

Gap   # merges  # failures
 size
369       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta21P067F03P137D101R1_027.ab1     1 
Contig length: old 542, new 542

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Ta21P067F03P137D101F1_027.ab1     1 
Contig length: old 544, new 544