No. words: 1915; after pruning: 1863


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:588)  581  0.00 0.00 0.00  BM134557Ta24P067F03P101G121F1_083.ab1        1   589 (40)  C BM134557Ta24P067F03P101G121R1_083.ab1   (55)   589     1 *
Merge:(0)    0    0.0 0.3 (1,1:-94)  165  8.85 0.00 0.00  BM134557Ta24P067F03P101G121F1_084.ab1        1   226 (0)    BM134557Ta24P067F03P101G121R1_084.ab1       95   320 (96) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  296 nodes

 150 str. conn. components

Path
    1  C BM134557Ta24P067F03P101G121R1_083.ab1   644 
   63    BM134557Ta24P067F03P101G121F1_083.ab1     8 
   71  C BM134557Ta24P067F03P101G121R1_083.ab1   574 
   95    BM134557Ta24P067F03P101G121F1_083.ab1    40 
   99  C BM134557Ta24P067F03P101G121R1_083.ab1   546 
  111    BM134557Ta24P067F03P101G121F1_083.ab1    56 
  119  C BM134557Ta24P067F03P101G121R1_083.ab1   526 
  515    BM134557Ta24P067F03P101G121F1_083.ab1   460 
  519  C BM134557Ta24P067F03P101G121R1_083.ab1   126 
  551    BM134557Ta24P067F03P101G121F1_083.ab1   496 
  563  C BM134557Ta24P067F03P101G121R1_083.ab1    82 
  579    BM134557Ta24P067F03P101G121F1_083.ab1   524 
  587  C BM134557Ta24P067F03P101G121R1_083.ab1    58 
  619    BM134557Ta24P067F03P101G121F1_083.ab1   564 
  623  C BM134557Ta24P067F03P101G121R1_083.ab1    22 
  631    BM134557Ta24P067F03P101G121F1_083.ab1   576 
Contig length: old 684, new 684

Contig 1:  66 nodes

 35 str. conn. components

Path
    1    BM134557Ta24P067F03P101G121R1_084.ab1     1 
  199    BM134557Ta24P067F03P101G121F1_084.ab1   105 
  203    BM134557Ta24P067F03P101G121R1_084.ab1   203 
  278    BM134557Ta24P067F03P101G121F1_084.ab1   184 
  282    BM134557Ta24P067F03P101G121R1_084.ab1   282 
  303    BM134557Ta24P067F03P101G121F1_084.ab1   209 
  307    BM134557Ta24P067F03P101G121R1_084.ab1   307 
Contig length: old 416, new 416

Contig length: old 684, new 684
New start: 0 

Contig length: old 416, new 416
New start: 0