No. words: 1065; after pruning: 1039


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -543  -485  0 35    378     S -485- -448, E -377- 0
Fail: (1)  378   -3.1 -3.1 (1,1:485)   55  1.43 0.00 0.00  BM134557Td01P067F03P137D101F1_015.ab1       39   108 (413)  C BM134557Td01P067F03P137D101R1_015.ab1   (96)   448   379 *
  Worst pair: offset 0 
LLR breakdown: discreps: -0.3 (<20 part: -0.3 (#=1), >20:0.0 (#=0); in HQ: -0.3, out HQ 0.0), match: 1.5  trail: -2.6  lead: -1.8  total: -3.2   55  1.43 0.00 0.00  BM134557Td01P067F03P137D101F1_015.ab1       39   108 (413)  C BM134557Td01P067F03P137D101R1_015.ab1   (96)   448   379 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.1       0        1

Gap   # merges  # failures
 size
378       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td01P067F03P137D101R1_015.ab1     1 
Contig length: old 544, new 544

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td01P067F03P137D101F1_015.ab1     1 
Contig length: old 521, new 521