No. words: 1048; after pruning: 1022


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -528  -472  0 46    375     S -472- -433, E -374- 0
Fail: (1)  375   -3.3 -3.3 (1,1:472)   45  1.72 0.00 0.00  BM134557Td03P067F03P137D101F1_013.ab1       41    98 (421)  C BM134557Td03P067F03P137D101R1_013.ab1   (96)   433   376 *
  Worst pair: offset 0 
LLR breakdown: discreps: -0.7 (<20 part: -0.7 (#=1), >20:0.0 (#=0); in HQ: -0.7, out HQ 0.0), match: 1.3  trail: -2.1  lead: -1.8  total: -3.3   45  1.72 0.00 0.00  BM134557Td03P067F03P137D101F1_013.ab1       41    98 (421)  C BM134557Td03P067F03P137D101R1_013.ab1   (96)   433   376 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.3       0        1

Gap   # merges  # failures
 size
375       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td03P067F03P137D101R1_013.ab1     1 
Contig length: old 529, new 529

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td03P067F03P137D101F1_013.ab1     1 
Contig length: old 519, new 519