No. words: 1043; after pruning: 1017


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -523  -469  0 49    374     S -469- -438, E -373- 0
Fail: (1)  374   -2.9 -2.9 (1,1:469)   50  3.12 0.00 0.00  BM134557Td06P067F03P137D101F1_012.ab1       33    96 (423)  C BM134557Td06P067F03P137D101R1_012.ab1   (86)   438   375 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.9       0        1

Gap   # merges  # failures
 size
374       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td06P067F03P137D101R1_012.ab1     1 
Contig length: old 524, new 524

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td06P067F03P137D101F1_012.ab1     1 
Contig length: old 519, new 519