No. words: 1050; after pruning: 1024


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -528  -473  0 47    376     S -473- -453, E -375- 0
Fail: (1)  376   -2.8 -2.8 (1,1:473)   48  9.09 0.00 0.00  BM134557Td07P067F03P137D101F1_009.ab1       22    98 (423)  C BM134557Td07P067F03P137D101R1_009.ab1   (76)   453   377 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.8       0        1

Gap   # merges  # failures
 size
376       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td07P067F03P137D101R1_009.ab1     1 
Contig length: old 529, new 529

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td07P067F03P137D101F1_009.ab1     1 
Contig length: old 521, new 521