No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -536  -481  0 35    378     S -481- -456, E -377- 0
Fail: (1)  378   -3.2 -3.2 (1,1:481)   53  6.41 0.00 0.00  BM134557Td10P067F03P137D101F1_008.ab1       27   104 (413)  C BM134557Td10P067F03P137D101R1_008.ab1   (81)   456   379 *
  Worst pair: offset 0 
LLR breakdown: discreps: -0.9 (<20 part: -0.9 (#=5), >20:0.0 (#=0); in HQ: -0.9, out HQ 0.0), match: 1.6  trail: -2.6  lead: -1.4  total: -3.3   53  6.41 0.00 0.00  BM134557Td10P067F03P137D101F1_008.ab1       27   104 (413)  C BM134557Td10P067F03P137D101R1_008.ab1   (81)   456   379 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.2       0        1

Gap   # merges  # failures
 size
378       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td10P067F03P137D101R1_008.ab1     1 
Contig length: old 537, new 537

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM134557Td10P067F03P137D101F1_008.ab1     1 
Contig length: old 517, new 517