No. words: 1033; after pruning: 1007


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:572)  449  0.43 0.00 0.00  BM134557Tu01P067F03P067F091F1_021.ab1       75   534 (0)  C BM134557Tu01P067F03P067F091R1_021.ab1   (0)   499    40 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1    BM134557Tu01P067F03P067F091F1_021.ab1     1 
   78  C BM134557Tu01P067F03P067F091R1_021.ab1   496 
   82    BM134557Tu01P067F03P067F091F1_021.ab1    82 
   98  C BM134557Tu01P067F03P067F091R1_021.ab1   476 
  110    BM134557Tu01P067F03P067F091F1_021.ab1   110 
  122  C BM134557Tu01P067F03P067F091R1_021.ab1   452 
  130    BM134557Tu01P067F03P067F091F1_021.ab1   130 
  138  C BM134557Tu01P067F03P067F091R1_021.ab1   436 
  146    BM134557Tu01P067F03P067F091F1_021.ab1   146 
  170  C BM134557Tu01P067F03P067F091R1_021.ab1   404 
  182    BM134557Tu01P067F03P067F091F1_021.ab1   182 
  190  C BM134557Tu01P067F03P067F091R1_021.ab1   384 
  210    BM134557Tu01P067F03P067F091F1_021.ab1   210 
  214  C BM134557Tu01P067F03P067F091R1_021.ab1   360 
  218    BM134557Tu01P067F03P067F091F1_021.ab1   218 
  230  C BM134557Tu01P067F03P067F091R1_021.ab1   344 
  255    BM134557Tu01P067F03P067F091F1_021.ab1   255 
  263  C BM134557Tu01P067F03P067F091R1_021.ab1   311 
  279    BM134557Tu01P067F03P067F091F1_021.ab1   279 
  283  C BM134557Tu01P067F03P067F091R1_021.ab1   291 
  319    BM134557Tu01P067F03P067F091F1_021.ab1   319 
  327  C BM134557Tu01P067F03P067F091R1_021.ab1   247 
  331    BM134557Tu01P067F03P067F091F1_021.ab1   331 
  335  C BM134557Tu01P067F03P067F091R1_021.ab1   239 
  343    BM134557Tu01P067F03P067F091F1_021.ab1   343 
  347  C BM134557Tu01P067F03P067F091R1_021.ab1   227 
  379    BM134557Tu01P067F03P067F091F1_021.ab1   379 
  383  C BM134557Tu01P067F03P067F091R1_021.ab1   191 
Contig length: old 573, new 573

Contig length: old 573, new 573
New start: 0