No. words: 1188; after pruning: 1162


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 11.4 (1,1:572)  546  0.36 0.18 0.00  BM134557Tu02P067F03P067F091F1_019.ab1        3   563 (8)  C BM134557Tu02P067F03P067F091R1_019.ab1   (46)   571    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1  C BM134557Tu02P067F03P067F091R1_019.ab1   617 
   54    BM134557Tu02P067F03P067F091F1_019.ab1    10 
  130  C BM134557Tu02P067F03P067F091R1_019.ab1   487 
  134    BM134557Tu02P067F03P067F091F1_019.ab1    90 
  190  C BM134557Tu02P067F03P067F091R1_019.ab1   427 
  198    BM134557Tu02P067F03P067F091F1_019.ab1   154 
  214  C BM134557Tu02P067F03P067F091R1_019.ab1   403 
  298    BM134557Tu02P067F03P067F091F1_019.ab1   254 
  306  C BM134557Tu02P067F03P067F091R1_019.ab1   311 
  590    BM134557Tu02P067F03P067F091F1_019.ab1   546 
  598  C BM134557Tu02P067F03P067F091R1_019.ab1    19 
Contig length: old 617, new 616

Contig length: old 616, new 616
New start: 0