No. words: 440; after pruning: 414


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.2 (1,1:166)  158  0.00 0.60 0.60  BM135339Ta11P088B12P027E111F1_005.ab1        1   167 (55)  C BM135339Ta11P088B12P027E111R1_005.ab1   (51)   167     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1  C BM135339Ta11P088B12P027E111R1_005.ab1   218 
  119    BM135339Ta11P088B12P027E111F1_005.ab1    67 
  139  C BM135339Ta11P088B12P027E111R1_005.ab1    80 
  159    BM135339Ta11P088B12P027E111F1_005.ab1   107 
Contig length: old 273, new 274

Contig length: old 274, new 274
New start: 0