No. words: 1162; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 5.6 (1,1:429)  414  0.00 0.00 0.47  BM136936Ld02P027F05P027F111F1_065.ab1        4   429 (134)  C BM136936Ld02P027F05P027F111R1_065.ab1   (173)   426     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BM136936Ld02P027F05P027F111R1_065.ab1   599 
  197    BM136936Ld02P027F05P027F111F1_065.ab1    27 
  205  C BM136936Ld02P027F05P027F111R1_065.ab1   395 
  209    BM136936Ld02P027F05P027F111F1_065.ab1    39 
  229  C BM136936Ld02P027F05P027F111R1_065.ab1   371 
  233    BM136936Ld02P027F05P027F111F1_065.ab1    63 
  237  C BM136936Ld02P027F05P027F111R1_065.ab1   363 
  241    BM136936Ld02P027F05P027F111F1_065.ab1    71 
  305  C BM136936Ld02P027F05P027F111R1_065.ab1   295 
  469    BM136936Ld02P027F05P027F111F1_065.ab1   299 
  473  C BM136936Ld02P027F05P027F111R1_065.ab1   127 
  493    BM136936Ld02P027F05P027F111F1_065.ab1   323 
  497  C BM136936Ld02P027F05P027F111R1_065.ab1   103 
  557    BM136936Ld02P027F05P027F111F1_065.ab1   387 
  561  C BM136936Ld02P027F05P027F111R1_065.ab1    39 
  565    BM136936Ld02P027F05P027F111F1_065.ab1   395 
Contig length: old 732, new 733

Contig length: old 733, new 733
New start: 0