No. words: 1160; after pruning: 1134


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.9 (1,1:426)  410  0.00 0.23 0.70  BM136936Ld03P027F05P027F111F1_080.ab1        1   429 (137)  C BM136936Ld03P027F05P027F111R1_080.ab1   (167)   427     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C BM136936Ld03P027F05P027F111R1_080.ab1   594 
  217    BM136936Ld03P027F05P027F111F1_080.ab1    49 
  229  C BM136936Ld03P027F05P027F111R1_080.ab1   366 
  241    BM136936Ld03P027F05P027F111F1_080.ab1    73 
  281  C BM136936Ld03P027F05P027F111R1_080.ab1   314 
  293    BM136936Ld03P027F05P027F111F1_080.ab1   125 
  309  C BM136936Ld03P027F05P027F111R1_080.ab1   286 
  493    BM136936Ld03P027F05P027F111F1_080.ab1   325 
  517  C BM136936Ld03P027F05P027F111R1_080.ab1    78 
  549    BM136936Ld03P027F05P027F111F1_080.ab1   381 
  557  C BM136936Ld03P027F05P027F111R1_080.ab1    38 
  561    BM136936Ld03P027F05P027F111F1_080.ab1   393 
Contig length: old 733, new 734

Contig length: old 734, new 734
New start: 0