No. words: 1165; after pruning: 1139


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -2.1 -2.1 (1,1:427)  377  2.58 0.00 0.70  BM136936Ld04P027F05P027F111F1_078.ab1        4   429 (139)  C BM136936Ld04P027F05P027F111R1_078.ab1   (173)   424     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.1       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C BM136936Ld04P027F05P027F111R1_078.ab1   597 
  185    BM136936Ld04P027F05P027F111F1_078.ab1    15 
  309  C BM136936Ld04P027F05P027F111R1_078.ab1   289 
  593    BM136936Ld04P027F05P027F111F1_078.ab1   426 
Contig length: old 737, new 735

Contig length: old 735, new 736
New start: 0 
I Change at: 571; seg lengths: entry 1, contig 0