No. words: 1154; after pruning: 1128


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    6   -3.8 -3.8 (1,1:428)  372  2.84 0.00 0.71  BM136936Ld06P027F05P027F111F1_074.ab1        7   429 (138)  C BM136936Ld06P027F05P027F111R1_074.ab1   (165)   422     3 *
  Worst pair: offset 0 
LLR breakdown: discreps: -11.5 (<20 part: -7.1 (#=13), >20:-4.4 (#=2); in HQ: -11.5, out HQ 0.0), match: 9.1  trail: -0.8  lead: -0.6  total: -3.8  372  2.84 0.00 0.71  BM136936Ld06P027F05P027F111F1_074.ab1        7   429 (138)  C BM136936Ld06P027F05P027F111R1_074.ab1   (165)   422     3 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.8       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C BM136936Ld06P027F05P027F111R1_074.ab1   587 
  169    BM136936Ld06P027F05P027F111F1_074.ab1    10 
  298  C BM136936Ld06P027F05P027F111R1_074.ab1   290 
  582    BM136936Ld06P027F05P027F111F1_074.ab1   426 
Contig length: old 725, new 723

Contig length: old 723, new 724
New start: 0 
I Change at: 560; seg lengths: entry 1, contig 0