No. words: 1157; after pruning: 1131


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.8 (1,1:424)  410  0.00 0.00 0.70  BM136936Ld09P027F05P027F111F1_068.ab1        2   427 (134)  C BM136936Ld09P027F05P027F111R1_068.ab1   (173)   423     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BM136936Ld09P027F05P027F111R1_068.ab1   596 
  209    BM136936Ld09P027F05P027F111F1_068.ab1    37 
  305  C BM136936Ld09P027F05P027F111R1_068.ab1   292 
  497    BM136936Ld09P027F05P027F111F1_068.ab1   325 
  505  C BM136936Ld09P027F05P027F111R1_068.ab1    92 
  565    BM136936Ld09P027F05P027F111F1_068.ab1   393 
Contig length: old 732, new 733

Contig length: old 733, new 733
New start: 0