No. words: 1163; after pruning: 1137


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.3 (1,1:432)  416  0.00 0.23 0.46  BM136936Ld10P027F05P027F111F1_066.ab1        1   432 (135)  C BM136936Ld10P027F05P027F111R1_066.ab1   (163)   433     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C BM136936Ld10P027F05P027F111R1_066.ab1   596 
  199    BM136936Ld10P027F05P027F111F1_066.ab1    35 
  203  C BM136936Ld10P027F05P027F111R1_066.ab1   394 
  207    BM136936Ld10P027F05P027F111F1_066.ab1    43 
  235  C BM136936Ld10P027F05P027F111R1_066.ab1   362 
  239    BM136936Ld10P027F05P027F111F1_066.ab1    75 
  303  C BM136936Ld10P027F05P027F111R1_066.ab1   294 
  495    BM136936Ld10P027F05P027F111F1_066.ab1   331 
  507  C BM136936Ld10P027F05P027F111R1_066.ab1    90 
  547    BM136936Ld10P027F05P027F111F1_066.ab1   383 
  551  C BM136936Ld10P027F05P027F111R1_066.ab1    46 
  555    BM136936Ld10P027F05P027F111F1_066.ab1   391 
Contig length: old 730, new 731

Contig length: old 731, new 731
New start: 0