No. words: 599; after pruning: 573


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.8 -3.8 (1,1:230)  181  6.49 0.00 0.43  BM136936Sn27P059H10P027F111F1_090.ab1        1   231 (60)  C BM136936Sn27P059H10P027F111R1_090.ab1   (78)   230     1 *
  Worst pair: offset 1 
LLR breakdown: discreps: -8.6 (<20 part: -8.6 (#=16), >20:0.0 (#=0); in HQ: -8.6, out HQ 0.0), match: 4.8  total: -3.8  181  6.49 0.00 0.43  BM136936Sn27P059H10P027F111F1_090.ab1        1   231 (60)  C BM136936Sn27P059H10P027F111R1_090.ab1   (78)   230     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  76 nodes

 40 str. conn. components

Path
    1  C BM136936Sn27P059H10P027F111R1_090.ab1   308 
  303    BM136936Sn27P059H10P027F111F1_090.ab1   226 
Contig length: old 368, new 368

Contig length: old 368, new 368
New start: 0