No. words: 908; after pruning: 856


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.4 (1,1:-5)  201  3.95 0.00 0.00  BM136936Sn31P027F05P059A111F1_020.ab1        1   228 (0)    BM136936Sn31P027F05P059A111F1_017.ab1        6   233 (0) *
Merge:(0)    0    0.0 1.1 (1,1:-8)  150  9.48 0.00 0.00  BM136936Sn31P027F05P059A111R1_020.ab1        1   211 (17)    BM136936Sn31P027F05P059A111R1_017.ab1        9   219 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  54 nodes

 29 str. conn. components

Path
    1    BM136936Sn31P027F05P059A111R1_017.ab1     1 
   16    BM136936Sn31P027F05P059A111R1_020.ab1     8 
   20    BM136936Sn31P027F05P059A111R1_017.ab1    20 
   28    BM136936Sn31P027F05P059A111R1_020.ab1    20 
   36    BM136936Sn31P027F05P059A111R1_017.ab1    36 
   40    BM136936Sn31P027F05P059A111R1_020.ab1    32 
   61    BM136936Sn31P027F05P059A111R1_017.ab1    61 
   89    BM136936Sn31P027F05P059A111R1_020.ab1    81 
   97    BM136936Sn31P027F05P059A111R1_017.ab1    97 
  115    BM136936Sn31P027F05P059A111R1_020.ab1   107 
  135    BM136936Sn31P027F05P059A111R1_017.ab1   135 
  139    BM136936Sn31P027F05P059A111R1_020.ab1   131 
  162    BM136936Sn31P027F05P059A111R1_017.ab1   162 
  179    BM136936Sn31P027F05P059A111R1_020.ab1   171 
  183    BM136936Sn31P027F05P059A111R1_017.ab1   183 
  204    BM136936Sn31P027F05P059A111R1_020.ab1   196 
Contig length: old 236, new 236

Contig 1:  90 nodes

 47 str. conn. components

Path
    1    BM136936Sn31P027F05P059A111F1_017.ab1     1 
   13    BM136936Sn31P027F05P059A111F1_020.ab1     8 
   45    BM136936Sn31P027F05P059A111F1_017.ab1    45 
   53    BM136936Sn31P027F05P059A111F1_020.ab1    48 
   57    BM136936Sn31P027F05P059A111F1_017.ab1    57 
   65    BM136936Sn31P027F05P059A111F1_020.ab1    60 
   97    BM136936Sn31P027F05P059A111F1_017.ab1    97 
  109    BM136936Sn31P027F05P059A111F1_020.ab1   104 
  133    BM136936Sn31P027F05P059A111F1_017.ab1   133 
  142    BM136936Sn31P027F05P059A111F1_020.ab1   137 
  146    BM136936Sn31P027F05P059A111F1_017.ab1   146 
  155    BM136936Sn31P027F05P059A111F1_020.ab1   150 
  159    BM136936Sn31P027F05P059A111F1_017.ab1   159 
  175    BM136936Sn31P027F05P059A111F1_020.ab1   170 
  179    BM136936Sn31P027F05P059A111F1_017.ab1   179 
  194    BM136936Sn31P027F05P059A111F1_020.ab1   189 
  198    BM136936Sn31P027F05P059A111F1_017.ab1   198 
  202    BM136936Sn31P027F05P059A111F1_020.ab1   197 
Contig length: old 233, new 233

Contig length: old 236, new 236
New start: 0 
S Change at: 127; seg lengths: entry 1, contig 1
S Change at: 148; seg lengths: entry 1, contig 1
S Change at: 197; seg lengths: entry 4, contig 4
S Change at: 216; seg lengths: entry 1, contig 1

Contig length: old 233, new 233
New start: 0 
S Change at: 150; seg lengths: entry 1, contig 1
S Change at: 209; seg lengths: entry 1, contig 1