No. words: 929; after pruning: 877


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.1 (1,1:-1)  201  3.95 0.00 0.00  BM136936Ta13P027F05P059A111F1_008.ab1        1   228 (0)    BM136936Ta13P027F05P059A111F1_003.ab1        2   229 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)   19   -0.4 -0.4 (1,1:2)  142  9.72 0.00 0.93  BM136936Ta13P027F05P059A111R1_008.ab1        2   217 (19)    BM136936Ta13P027F05P059A111R1_003.ab1        1   214 (22) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.4       1        0

Gap   # merges  # failures
 size
19       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 


Contig 2:  42 nodes

 23 str. conn. components

Path
    1    BM136936Ta13P027F05P059A111R1_003.ab1     1 
    9    BM136936Ta13P027F05P059A111R1_008.ab1    10 
   98    BM136936Ta13P027F05P059A111R1_003.ab1    96 
  116    BM136936Ta13P027F05P059A111R1_008.ab1   117 
  203    BM136936Ta13P027F05P059A111R1_003.ab1   201 
Contig length: old 238, new 238

Contig 1:  86 nodes

 45 str. conn. components

Path
    1    BM136936Ta13P027F05P059A111F1_003.ab1     1 
    5    BM136936Ta13P027F05P059A111F1_008.ab1     4 
  101    BM136936Ta13P027F05P059A111F1_003.ab1   101 
  109    BM136936Ta13P027F05P059A111F1_008.ab1   108 
  138    BM136936Ta13P027F05P059A111F1_003.ab1   138 
  152    BM136936Ta13P027F05P059A111F1_008.ab1   151 
  160    BM136936Ta13P027F05P059A111F1_003.ab1   160 
  179    BM136936Ta13P027F05P059A111F1_008.ab1   178 
  183    BM136936Ta13P027F05P059A111F1_003.ab1   183 
  191    BM136936Ta13P027F05P059A111F1_008.ab1   190 
  195    BM136936Ta13P027F05P059A111F1_003.ab1   195 
  223    BM136936Ta13P027F05P059A111F1_008.ab1   222 
Contig length: old 229, new 229

Contig length: old 238, new 238
New start: 0 
S Change at: 147; seg lengths: entry 7, contig 7
S Change at: 167; seg lengths: entry 10, contig 10

Contig length: old 229, new 229
New start: 0 
S Change at: 205; seg lengths: entry 1, contig 1
S Change at: 215; seg lengths: entry 1, contig 1