No. words: 615; after pruning: 589


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.5 -3.5 (1,1:257)  210  5.02 0.00 0.77  BM136936Ta13P059H10P027F111F1_072.ab1        1   259 (38)  C BM136936Ta13P059H10P027F111R1_072.ab1   (61)   257     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -9.0 (<20 part: -9.0 (#=15), >20:0.0 (#=0); in HQ: -9.0, out HQ 0.0), match: 5.4  total: -3.6  210  5.02 0.00 0.77  BM136936Ta13P059H10P027F111F1_072.ab1        1   259 (38)  C BM136936Ta13P059H10P027F111R1_072.ab1   (61)   257     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.5       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  92 nodes

 48 str. conn. components

Path
    1  C BM136936Ta13P059H10P027F111R1_072.ab1   318 
  308    BM136936Ta13P059H10P027F111F1_072.ab1   248 
Contig length: old 357, new 357

Contig length: old 357, new 357
New start: 0