No. words: 612; after pruning: 586


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.3 -3.3 (1,1:259)  206  5.75 0.00 0.77  BM136936Ta18P059H10P027F111F1_093.ab1        1   261 (37)  C BM136936Ta18P059H10P027F111R1_093.ab1   (55)   259     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -8.8 (<20 part: -8.8 (#=17), >20:0.0 (#=0); in HQ: -8.8, out HQ 0.0), match: 5.4  total: -3.4  206  5.75 0.00 0.77  BM136936Ta18P059H10P027F111F1_093.ab1        1   261 (37)  C BM136936Ta18P059H10P027F111R1_093.ab1   (55)   259     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.3       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1  C BM136936Ta18P059H10P027F111R1_093.ab1   314 
  305    BM136936Ta18P059H10P027F111F1_093.ab1   251 
Contig length: old 352, new 352

Contig length: old 352, new 352
New start: 0