No. words: 868; after pruning: 816


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 3.9 (1,1:-1)  204  0.95 0.00 0.00  BM136936Ta20P027F05P059A111F1_025.ab1        3   212 (0)    BM136936Ta20P027F05P059A111R1_025.ab1        4   213 (11) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1    BM136936Ta20P027F05P059A111R1_025.ab1     1 
   33    BM136936Ta20P027F05P059A111F1_025.ab1    32 
   41    BM136936Ta20P027F05P059A111R1_025.ab1    41 
   53    BM136936Ta20P027F05P059A111F1_025.ab1    52 
   57    BM136936Ta20P027F05P059A111R1_025.ab1    57 
   85    BM136936Ta20P027F05P059A111F1_025.ab1    84 
   93    BM136936Ta20P027F05P059A111R1_025.ab1    93 
  101    BM136936Ta20P027F05P059A111F1_025.ab1   100 
  105    BM136936Ta20P027F05P059A111R1_025.ab1   105 
  157    BM136936Ta20P027F05P059A111F1_025.ab1   156 
  169    BM136936Ta20P027F05P059A111R1_025.ab1   169 
  184    BM136936Ta20P027F05P059A111F1_025.ab1   183 
  204    BM136936Ta20P027F05P059A111R1_025.ab1   204 
Contig length: old 224, new 224

Contig length: old 224, new 224
New start: 0 
S Change at: 180; seg lengths: entry 1, contig 1