No. words: 643; after pruning: 617


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -3.1 -3.1 (1,1:275)  219  5.47 0.36 0.36  BM136936Ta22P059H10P027F111F1_085.ab1        3   276 (56)  C BM136936Ta22P059H10P027F111R1_085.ab1   (37)   274     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -8.3 (<20 part: -8.3 (#=17), >20:0.0 (#=0); in HQ: -8.3, out HQ 0.0), match: 5.7  lead: -0.6  total: -3.2  219  5.47 0.36 0.36  BM136936Ta22P059H10P027F111F1_085.ab1        3   276 (56)  C BM136936Ta22P059H10P027F111R1_085.ab1   (37)   274     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.1       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  92 nodes

 48 str. conn. components

Path
    1  C BM136936Ta22P059H10P027F111R1_085.ab1   311 
  308    BM136936Ta22P059H10P027F111F1_085.ab1   273 
Contig length: old 367, new 367

Contig length: old 367, new 367
New start: 0