No. words: 614; after pruning: 588


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    0   -4.9 -4.9 (1,1:255)  184  8.17 0.00 0.78  BM136936Ta23P059H10P027F111F1_083.ab1        1   257 (40)  C BM136936Ta23P059H10P027F111R1_083.ab1   (62)   255     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -10.2 (<20 part: -10.2 (#=23), >20:0.0 (#=0); in HQ: -10.2, out HQ 0.0), match: 5.2  total: -5.0  184  8.17 0.00 0.78  BM136936Ta23P059H10P027F111F1_083.ab1        1   257 (40)  C BM136936Ta23P059H10P027F111R1_083.ab1   (62)   255     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.9       0        1

Gap   # merges  # failures
 size
 0       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BM136936Ta23P059H10P027F111R1_083.ab1     1 
Contig length: old 317, new 317

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BM136936Ta23P059H10P027F111F1_083.ab1     1 
Contig length: old 297, new 297