No. words: 892; after pruning: 840


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:14)  192  2.35 0.00 0.47  BM136936Ta24P027F05P059A111F1_017.ab1       14   226 (15)    BM136936Ta24P027F05P059A111F1_026.ab1        1   212 (0) *
Merge:(0)    3    0.0 0.1 (1,1:-1)  140  8.70 0.97 0.48  BM136936Ta24P027F05P059A111R1_017.ab1        1   207 (21)    BM136936Ta24P027F05P059A111R1_026.ab1        1   208 (3) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  42 nodes

 23 str. conn. components

Path
    1    BM136936Ta24P027F05P059A111R1_017.ab1     1 
   97    BM136936Ta24P027F05P059A111R1_026.ab1    98 
  109    BM136936Ta24P027F05P059A111R1_017.ab1   109 
  200    BM136936Ta24P027F05P059A111R1_026.ab1   201 
  204    BM136936Ta24P027F05P059A111R1_017.ab1   204 
Contig length: old 229, new 228

Contig 1:  86 nodes

 45 str. conn. components

Path
    1    BM136936Ta24P027F05P059A111F1_017.ab1     1 
   41    BM136936Ta24P027F05P059A111F1_026.ab1    28 
   91    BM136936Ta24P027F05P059A111F1_017.ab1    92 
  111    BM136936Ta24P027F05P059A111F1_026.ab1    98 
  115    BM136936Ta24P027F05P059A111F1_017.ab1   116 
  149    BM136936Ta24P027F05P059A111F1_026.ab1   136 
  163    BM136936Ta24P027F05P059A111F1_017.ab1   164 
  198    BM136936Ta24P027F05P059A111F1_026.ab1   185 
  217    BM136936Ta24P027F05P059A111F1_017.ab1   218 
Contig length: old 241, new 240

Contig length: old 228, new 229
New start: 0 
I Change at: 11; seg lengths: entry 1, contig 0
S Change at: 60; seg lengths: entry 3, contig 3
S Change at: 66; seg lengths: entry 1, contig 1
S Change at: 80; seg lengths: entry 1, contig 1
S Change at: 121; seg lengths: entry 1, contig 1
S Change at: 163; seg lengths: entry 5, contig 5
S Change at: 178; seg lengths: entry 1, contig 1

Contig length: old 240, new 240
New start: 0 
S Change at: 155; seg lengths: entry 1, contig 1
S Change at: 213; seg lengths: entry 1, contig 1