No. words: 913; after pruning: 861


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 3.4 (1,1:167)  158  0.60 0.00 0.60  BM136936Td04P027F05P059A111F1_014.ab1        1   168 (42)  C BM136936Td04P027F05P059A111R1_014.ab1   (59)   167     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (2,1:170)  220  0.00 0.44 0.00  BM136936Td04P027F05P059A111R1_014.ab1        1   226 (0)    BM136936Td04P027F05P059A111R1_009.ab1        3   229 (8) *
Merge:(0)    0    0.0 4.5 (3,1:-16)  206  0.48 0.00 0.00  BM136936Td04P027F05P059A111F1_014.ab1        1   210 (0)    BM136936Td04P027F05P059A111F1_009.ab1       17   226 (14) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  542 nodes

 156 str. conn. components

Path
    1  C BM136936Td04P027F05P059A111R1_009.ab1   237 
   98    BM136936Td04P027F05P059A111F1_009.ab1    47 
  106  C BM136936Td04P027F05P059A111R1_009.ab1   132 
  114    BM136936Td04P027F05P059A111F1_009.ab1    63 
  131    BM136936Td04P027F05P059A111F1_014.ab1    64 
  134    BM136936Td04P027F05P059A111F1_009.ab1    83 
  171    BM136936Td04P027F05P059A111F1_014.ab1   104 
  179    BM136936Td04P027F05P059A111F1_009.ab1   128 
  186    BM136936Td04P027F05P059A111F1_014.ab1   119 
  187    BM136936Td04P027F05P059A111F1_009.ab1   136 
  190  C BM136936Td04P027F05P059A111R1_009.ab1    48 
  202    BM136936Td04P027F05P059A111F1_009.ab1   151 
Contig length: old 290, new 291

Contig length: old 291, new 291
New start: 0