No. words: 467; after pruning: 441


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -0.6 -0.6 (1,1:175)  165  0.00 0.57 0.57  BM137927Ta12P059B11P027G111F1_042.ab1        3   176 (60)  C BM137927Ta12P059B11P027G111R1_042.ab1   (57)   174     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  84 nodes

 44 str. conn. components

Path
    1  C BM137927Ta12P059B11P027G111R1_042.ab1   231 
  127    BM137927Ta12P059B11P027G111F1_042.ab1    71 
  135  C BM137927Ta12P059B11P027G111R1_042.ab1    97 
  143    BM137927Ta12P059B11P027G111F1_042.ab1    87 
  167  C BM137927Ta12P059B11P027G111R1_042.ab1    65 
  171    BM137927Ta12P059B11P027G111F1_042.ab1   115 
Contig length: old 291, new 292

Contig length: old 292, new 292
New start: 0