No. words: 1783; after pruning: 1757


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.1 (1,1:966)  810  0.00 0.00 0.00  BM138163Ld01P027H05P027H111F1_090.ab1      102   917 (0)  C BM138163Ld01P027H05P027H111R1_090.ab1   (0)   866    51 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1    BM138163Ld01P027H05P027H111F1_090.ab1     1 
  321  C BM138163Ld01P027H05P027H111R1_090.ab1   647 
  469    BM138163Ld01P027H05P027H111F1_090.ab1   469 
  597  C BM138163Ld01P027H05P027H111R1_090.ab1   371 
  605    BM138163Ld01P027H05P027H111F1_090.ab1   605 
  637  C BM138163Ld01P027H05P027H111R1_090.ab1   331 
  641    BM138163Ld01P027H05P027H111F1_090.ab1   641 
  653  C BM138163Ld01P027H05P027H111R1_090.ab1   315 
  657    BM138163Ld01P027H05P027H111F1_090.ab1   657 
  661  C BM138163Ld01P027H05P027H111R1_090.ab1   307 
Contig length: old 967, new 967

Contig length: old 967, new 967
New start: 0