No. words: 1801; after pruning: 1775


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.2 (1,1:958)  824  0.48 0.00 0.00  BM138163Ld02P027H05P027H111F1_088.ab1       75   916 (0)  C BM138163Ld02P027H05P027H111R1_088.ab1   (0)   885    44 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1    BM138163Ld02P027H05P027H111F1_088.ab1     1 
  614  C BM138163Ld02P027H05P027H111R1_088.ab1   346 
Contig length: old 959, new 959

Contig length: old 959, new 959
New start: 0 
S Change at: 880; seg lengths: entry 1, contig 1