No. words: 1675; after pruning: 1635


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:959)  710  0.14 0.00 0.00  BM138163Ld05P027H05P027H111F1_088.ab1      129   843 (0)  C BM138163Ld05P027H05P027H111R1_088.ab1   (0)   832   118 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1    BM138163Ld05P027H05P027H111F1_088.ab1     1 
  368  C BM138163Ld05P027H05P027H111R1_088.ab1   593 
  372    BM138163Ld05P027H05P027H111F1_088.ab1   372 
  376  C BM138163Ld05P027H05P027H111R1_088.ab1   585 
  380    BM138163Ld05P027H05P027H111F1_088.ab1   380 
  404  C BM138163Ld05P027H05P027H111R1_088.ab1   557 
  428    BM138163Ld05P027H05P027H111F1_088.ab1   428 
  444  C BM138163Ld05P027H05P027H111R1_088.ab1   517 
  464    BM138163Ld05P027H05P027H111F1_088.ab1   464 
  472  C BM138163Ld05P027H05P027H111R1_088.ab1   489 
  480    BM138163Ld05P027H05P027H111F1_088.ab1   480 
  484  C BM138163Ld05P027H05P027H111R1_088.ab1   477 
  556    BM138163Ld05P027H05P027H111F1_088.ab1   556 
  560  C BM138163Ld05P027H05P027H111R1_088.ab1   401 
  568    BM138163Ld05P027H05P027H111F1_088.ab1   568 
  572  C BM138163Ld05P027H05P027H111R1_088.ab1   389 
  616    BM138163Ld05P027H05P027H111F1_088.ab1   616 
  624  C BM138163Ld05P027H05P027H111R1_088.ab1   337 
Contig length: old 960, new 960

Contig length: old 960, new 960
New start: 0