No. words: 1144; after pruning: 1118


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.4 (1,1:945)  174  3.08 0.00 0.00  BM138163Ld09P027H05P027H111F1_086.ab1      548   742 (0)  C BM138163Ld09P027H05P027H111R1_086.ab1   (3)   399   205 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1    BM138163Ld09P027H05P027H111F1_086.ab1     1 
  559  C BM138163Ld09P027H05P027H111R1_086.ab1   388 
  563    BM138163Ld09P027H05P027H111F1_086.ab1   563 
  628  C BM138163Ld09P027H05P027H111R1_086.ab1   319 
  632    BM138163Ld09P027H05P027H111F1_086.ab1   632 
  656  C BM138163Ld09P027H05P027H111R1_086.ab1   291 
  676    BM138163Ld09P027H05P027H111F1_086.ab1   676 
  680  C BM138163Ld09P027H05P027H111R1_086.ab1   267 
Contig length: old 946, new 946

Contig length: old 946, new 946
New start: 0