No. words: 1042; after pruning: 1016


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.5 (1,1:378)  371  0.00 0.00 0.00  BM138225Ld01P003F01F07F1_012.ab1        1   377 (153)  C BM138225Ld01P003F01F07R1_012.ab1   (133)   379     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C BM138225Ld01P003F01F07R1_012.ab1   512 
  157    BM138225Ld01P003F01F07F1_012.ab1    24 
  161  C BM138225Ld01P003F01F07R1_012.ab1   352 
  349    BM138225Ld01P003F01F07F1_012.ab1   216 
  409  C BM138225Ld01P003F01F07R1_012.ab1   104 
  437    BM138225Ld01P003F01F07F1_012.ab1   304 
  449  C BM138225Ld01P003F01F07R1_012.ab1    64 
  453    BM138225Ld01P003F01F07F1_012.ab1   320 
  461  C BM138225Ld01P003F01F07R1_012.ab1    52 
  469    BM138225Ld01P003F01F07F1_012.ab1   336 
  477  C BM138225Ld01P003F01F07R1_012.ab1    36 
  481    BM138225Ld01P003F01F07F1_012.ab1   348 
Contig length: old 663, new 663

Contig length: old 663, new 663
New start: 0