No. words: 1035; after pruning: 1009


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:371)  366  0.00 0.00 0.00  BM138225Ld02P003F01F07F1_016.ab1        1   372 (158)  C BM138225Ld02P003F01F07R1_016.ab1   (133)   372     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C BM138225Ld02P003F01F07R1_016.ab1   505 
  317    BM138225Ld02P003F01F07F1_016.ab1   184 
  325  C BM138225Ld02P003F01F07R1_016.ab1   181 
  341    BM138225Ld02P003F01F07F1_016.ab1   208 
  345  C BM138225Ld02P003F01F07R1_016.ab1   161 
  349    BM138225Ld02P003F01F07F1_016.ab1   216 
  357  C BM138225Ld02P003F01F07R1_016.ab1   149 
  361    BM138225Ld02P003F01F07F1_016.ab1   228 
  365  C BM138225Ld02P003F01F07R1_016.ab1   141 
  397    BM138225Ld02P003F01F07F1_016.ab1   264 
  409  C BM138225Ld02P003F01F07R1_016.ab1    97 
  437    BM138225Ld02P003F01F07F1_016.ab1   304 
  449  C BM138225Ld02P003F01F07R1_016.ab1    57 
  453    BM138225Ld02P003F01F07F1_016.ab1   320 
  473  C BM138225Ld02P003F01F07R1_016.ab1    33 
  477    BM138225Ld02P003F01F07F1_016.ab1   344 
Contig length: old 663, new 663

Contig length: old 663, new 663
New start: 0