No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:401)  393  0.00 0.25 0.00  BM138225Ld04P003F01F07F1_032.ab1        1   402 (122)  C BM138225Ld04P003F01F07R1_032.ab1   (139)   403     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C BM138225Ld04P003F01F07R1_032.ab1   542 
  269    BM138225Ld04P003F01F07F1_032.ab1   129 
  277  C BM138225Ld04P003F01F07R1_032.ab1   266 
  285    BM138225Ld04P003F01F07F1_032.ab1   145 
  293  C BM138225Ld04P003F01F07R1_032.ab1   250 
  357    BM138225Ld04P003F01F07F1_032.ab1   217 
  361  C BM138225Ld04P003F01F07R1_032.ab1   182 
  385    BM138225Ld04P003F01F07F1_032.ab1   245 
  405  C BM138225Ld04P003F01F07R1_032.ab1   138 
  413    BM138225Ld04P003F01F07F1_032.ab1   273 
  421  C BM138225Ld04P003F01F07R1_032.ab1   122 
  425    BM138225Ld04P003F01F07F1_032.ab1   285 
  437  C BM138225Ld04P003F01F07R1_032.ab1   106 
  449    BM138225Ld04P003F01F07F1_032.ab1   309 
  461  C BM138225Ld04P003F01F07R1_032.ab1    82 
  465    BM138225Ld04P003F01F07F1_032.ab1   325 
  489  C BM138225Ld04P003F01F07R1_032.ab1    54 
  501    BM138225Ld04P003F01F07F1_032.ab1   361 
  521  C BM138225Ld04P003F01F07R1_032.ab1    22 
  529    BM138225Ld04P003F01F07F1_032.ab1   389 
Contig length: old 664, new 664

Contig length: old 664, new 664
New start: 0