No. words: 1062; after pruning: 1036


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:395)  390  0.00 0.00 0.00  BM138225Ld09P003F01F07F1_076.ab1        1   396 (130)  C BM138225Ld09P003F01F07R1_076.ab1   (140)   396     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C BM138225Ld09P003F01F07R1_076.ab1   536 
  189    BM138225Ld09P003F01F07F1_076.ab1    49 
  193  C BM138225Ld09P003F01F07R1_076.ab1   344 
  341    BM138225Ld09P003F01F07F1_076.ab1   201 
  345  C BM138225Ld09P003F01F07R1_076.ab1   192 
  365    BM138225Ld09P003F01F07F1_076.ab1   225 
  441  C BM138225Ld09P003F01F07R1_076.ab1    96 
  449    BM138225Ld09P003F01F07F1_076.ab1   309 
  461  C BM138225Ld09P003F01F07R1_076.ab1    76 
  465    BM138225Ld09P003F01F07F1_076.ab1   325 
  481  C BM138225Ld09P003F01F07R1_076.ab1    56 
  485    BM138225Ld09P003F01F07F1_076.ab1   345 
  493  C BM138225Ld09P003F01F07R1_076.ab1    44 
  497    BM138225Ld09P003F01F07F1_076.ab1   357 
  529  C BM138225Ld09P003F01F07R1_076.ab1     8 
  533    BM138225Ld09P003F01F07F1_076.ab1   393 
Contig length: old 666, new 666

Contig length: old 666, new 666
New start: 0