No. words: 1079; after pruning: 1053


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:408)  396  0.24 0.24 0.00  BM138225Ld10P003F01F07F1_080.ab1        1   409 (119)  C BM138225Ld10P003F01F07R1_080.ab1   (141)   410     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C BM138225Ld10P003F01F07R1_080.ab1   551 
  256    BM138225Ld10P003F01F07F1_080.ab1   114 
  260  C BM138225Ld10P003F01F07R1_080.ab1   292 
  276    BM138225Ld10P003F01F07F1_080.ab1   134 
  280  C BM138225Ld10P003F01F07R1_080.ab1   272 
  332    BM138225Ld10P003F01F07F1_080.ab1   190 
  340  C BM138225Ld10P003F01F07R1_080.ab1   212 
  344    BM138225Ld10P003F01F07F1_080.ab1   202 
  364  C BM138225Ld10P003F01F07R1_080.ab1   188 
  368    BM138225Ld10P003F01F07F1_080.ab1   226 
  412  C BM138225Ld10P003F01F07R1_080.ab1   140 
  416    BM138225Ld10P003F01F07F1_080.ab1   274 
  464  C BM138225Ld10P003F01F07R1_080.ab1    88 
  468    BM138225Ld10P003F01F07F1_080.ab1   326 
  528  C BM138225Ld10P003F01F07R1_080.ab1    24 
  532    BM138225Ld10P003F01F07F1_080.ab1   390 
Contig length: old 670, new 670

Contig length: old 670, new 670
New start: 0