No. words: 1032; after pruning: 1006


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:349)  344  0.00 0.00 0.00  BM138418Ld01P129H06P129H121F1_080.ab1        1   350 (148)  C BM138418Ld01P129H06P129H121R1_080.ab1   (184)   350     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C BM138418Ld01P129H06P129H121R1_080.ab1   534 
  232    BM138418Ld01P129H06P129H121F1_080.ab1    48 
  236  C BM138418Ld01P129H06P129H121R1_080.ab1   299 
  284    BM138418Ld01P129H06P129H121F1_080.ab1   100 
  296  C BM138418Ld01P129H06P129H121R1_080.ab1   239 
  336    BM138418Ld01P129H06P129H121F1_080.ab1   152 
  376  C BM138418Ld01P129H06P129H121R1_080.ab1   159 
  384    BM138418Ld01P129H06P129H121F1_080.ab1   200 
Contig length: old 682, new 682

Contig length: old 682, new 682
New start: 0