No. words: 1036; after pruning: 1010


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.2 (1,1:349)  342  0.00 0.00 0.00  BM138418Ld03P129H06P129H121F1_076.ab1        5   350 (190)  C BM138418Ld03P129H06P129H121R1_076.ab1   (150)   346     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C BM138418Ld03P129H06P129H121R1_076.ab1   496 
  194    BM138418Ld03P129H06P129H121F1_076.ab1    48 
  206  C BM138418Ld03P129H06P129H121R1_076.ab1   291 
  222    BM138418Ld03P129H06P129H121F1_076.ab1    76 
  230  C BM138418Ld03P129H06P129H121R1_076.ab1   267 
  242    BM138418Ld03P129H06P129H121F1_076.ab1    96 
  250  C BM138418Ld03P129H06P129H121R1_076.ab1   247 
  258    BM138418Ld03P129H06P129H121F1_076.ab1   112 
  286  C BM138418Ld03P129H06P129H121R1_076.ab1   211 
  310    BM138418Ld03P129H06P129H121F1_076.ab1   164 
Contig length: old 686, new 686

Contig length: old 686, new 686
New start: 0