No. words: 1045; after pruning: 1019


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 5.5 (1,1:360)  350  0.00 0.00 0.00  BM138418Ld04P129H06P129H121F1_074.ab1        3   358 (180)  C BM138418Ld04P129H06P129H121R1_074.ab1   (148)   359     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C BM138418Ld04P129H06P129H121R1_074.ab1   507 
  204    BM138418Ld04P129H06P129H121F1_074.ab1    58 
  208  C BM138418Ld04P129H06P129H121R1_074.ab1   300 
  220    BM138418Ld04P129H06P129H121F1_074.ab1    74 
  228  C BM138418Ld04P129H06P129H121R1_074.ab1   280 
  256    BM138418Ld04P129H06P129H121F1_074.ab1   110 
  268  C BM138418Ld04P129H06P129H121R1_074.ab1   240 
  276    BM138418Ld04P129H06P129H121F1_074.ab1   130 
  348  C BM138418Ld04P129H06P129H121R1_074.ab1   160 
  356    BM138418Ld04P129H06P129H121F1_074.ab1   210 
Contig length: old 684, new 684

Contig length: old 684, new 684
New start: 0