No. words: 1034; after pruning: 1008


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:350)  340  0.00 0.00 0.28  BM138418Ld05P129H06P129H121F1_072.ab1        1   351 (178)  C BM138418Ld05P129H06P129H121R1_072.ab1   (155)   350     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C BM138418Ld05P129H06P129H121R1_072.ab1   505 
  219    BM138418Ld05P129H06P129H121F1_072.ab1    64 
  227  C BM138418Ld05P129H06P129H121R1_072.ab1   279 
  259    BM138418Ld05P129H06P129H121F1_072.ab1   104 
  271  C BM138418Ld05P129H06P129H121R1_072.ab1   235 
  307    BM138418Ld05P129H06P129H121F1_072.ab1   152 
  391  C BM138418Ld05P129H06P129H121R1_072.ab1   115 
  403    BM138418Ld05P129H06P129H121F1_072.ab1   248 
Contig length: old 683, new 684

Contig length: old 684, new 684
New start: 0