No. words: 1032; after pruning: 1006


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:343)  339  0.00 0.00 0.00  BM138418Ld06P129H06P129H121F1_070.ab1        1   344 (185)  C BM138418Ld06P129H06P129H121R1_070.ab1   (159)   344     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C BM138418Ld06P129H06P129H121R1_070.ab1   503 
  223    BM138418Ld06P129H06P129H121F1_070.ab1    64 
  231  C BM138418Ld06P129H06P129H121R1_070.ab1   273 
  259    BM138418Ld06P129H06P129H121F1_070.ab1   100 
  287  C BM138418Ld06P129H06P129H121R1_070.ab1   217 
  339    BM138418Ld06P129H06P129H121F1_070.ab1   180 
Contig length: old 688, new 688

Contig length: old 688, new 688
New start: 0