No. words: 1026; after pruning: 1000


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:341)  338  0.00 0.00 0.00  BM138418Ld07P129H06P129H121F1_068.ab1        1   342 (186)  C BM138418Ld07P129H06P129H121R1_068.ab1   (156)   342     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C BM138418Ld07P129H06P129H121R1_068.ab1   498 
  192    BM138418Ld07P129H06P129H121F1_068.ab1    36 
  204  C BM138418Ld07P129H06P129H121R1_068.ab1   295 
  220    BM138418Ld07P129H06P129H121F1_068.ab1    64 
  228  C BM138418Ld07P129H06P129H121R1_068.ab1   271 
  240    BM138418Ld07P129H06P129H121F1_068.ab1    84 
  248  C BM138418Ld07P129H06P129H121R1_068.ab1   251 
  256    BM138418Ld07P129H06P129H121F1_068.ab1   100 
  272  C BM138418Ld07P129H06P129H121R1_068.ab1   227 
  276    BM138418Ld07P129H06P129H121F1_068.ab1   120 
  284  C BM138418Ld07P129H06P129H121R1_068.ab1   215 
  336    BM138418Ld07P129H06P129H121F1_068.ab1   180 
  396  C BM138418Ld07P129H06P129H121R1_068.ab1   103 
  404    BM138418Ld07P129H06P129H121F1_068.ab1   248 
Contig length: old 684, new 684

Contig length: old 684, new 684
New start: 0