No. words: 1033; after pruning: 1007


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:341)  337  0.00 0.00 0.00  BM138418Ld09P129H06P129H121F1_095.ab1        1   342 (160)  C BM138418Ld09P129H06P129H121R1_095.ab1   (189)   342     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C BM138418Ld09P129H06P129H121R1_095.ab1   531 
  289    BM138418Ld09P129H06P129H121F1_095.ab1   100 
  297  C BM138418Ld09P129H06P129H121R1_095.ab1   235 
  301    BM138418Ld09P129H06P129H121F1_095.ab1   112 
  305  C BM138418Ld09P129H06P129H121R1_095.ab1   227 
  313    BM138418Ld09P129H06P129H121F1_095.ab1   124 
  317  C BM138418Ld09P129H06P129H121R1_095.ab1   215 
  321    BM138418Ld09P129H06P129H121F1_095.ab1   132 
  381  C BM138418Ld09P129H06P129H121R1_095.ab1   151 
  389    BM138418Ld09P129H06P129H121F1_095.ab1   200 
  465  C BM138418Ld09P129H06P129H121R1_095.ab1    67 
  469    BM138418Ld09P129H06P129H121F1_095.ab1   280 
Contig length: old 691, new 691

Contig length: old 691, new 691
New start: 0