No. words: 1026; after pruning: 1000


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:337)  334  0.00 0.00 0.00  BM138418Ld10P129H06P129H121F1_093.ab1        1   338 (190)  C BM138418Ld10P129H06P129H121R1_093.ab1   (160)   338     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C BM138418Ld10P129H06P129H121R1_093.ab1   498 
  224    BM138418Ld10P129H06P129H121F1_093.ab1    64 
  232  C BM138418Ld10P129H06P129H121R1_093.ab1   267 
  260    BM138418Ld10P129H06P129H121F1_093.ab1   100 
  352  C BM138418Ld10P129H06P129H121R1_093.ab1   147 
  364    BM138418Ld10P129H06P129H121F1_093.ab1   204 
Contig length: old 688, new 688

Contig length: old 688, new 688
New start: 0