No. words: 1039; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.2 (1,1:350)  341  0.00 0.29 0.00  BM138418Ld11P129H06P129H121F1_091.ab1        3   351 (186)  C BM138418Ld11P129H06P129H121R1_091.ab1   (152)   350     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C BM138418Ld11P129H06P129H121R1_091.ab1   502 
  199    BM138418Ld11P129H06P129H121F1_091.ab1    48 
  211  C BM138418Ld11P129H06P129H121R1_091.ab1   292 
  223    BM138418Ld11P129H06P129H121F1_091.ab1    72 
  231  C BM138418Ld11P129H06P129H121R1_091.ab1   272 
  263    BM138418Ld11P129H06P129H121F1_091.ab1   112 
  287  C BM138418Ld11P129H06P129H121R1_091.ab1   216 
  347    BM138418Ld11P129H06P129H121F1_091.ab1   196 
  355  C BM138418Ld11P129H06P129H121R1_091.ab1   148 
  359    BM138418Ld11P129H06P129H121F1_091.ab1   208 
  435  C BM138418Ld11P129H06P129H121R1_091.ab1    68 
  439    BM138418Ld11P129H06P129H121F1_091.ab1   288 
Contig length: old 688, new 688

Contig length: old 688, new 688
New start: 0