No. words: 1025; after pruning: 999


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:336)  332  0.00 0.00 0.00  BM138418Ld12P129H06P129H121F1_089.ab1        1   337 (192)  C BM138418Ld12P129H06P129H121R1_089.ab1   (159)   337     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C BM138418Ld12P129H06P129H121R1_089.ab1   496 
  223    BM138418Ld12P129H06P129H121F1_089.ab1    64 
  231  C BM138418Ld12P129H06P129H121R1_089.ab1   266 
  259    BM138418Ld12P129H06P129H121F1_089.ab1   100 
  271  C BM138418Ld12P129H06P129H121R1_089.ab1   226 
  311    BM138418Ld12P129H06P129H121F1_089.ab1   152 
  315  C BM138418Ld12P129H06P129H121R1_089.ab1   182 
  339    BM138418Ld12P129H06P129H121F1_089.ab1   180 
Contig length: old 688, new 688

Contig length: old 688, new 688
New start: 0